jasminecorp.net directory
Updated Blogs
Computer Support Blog
Essensial Software for Web Based Support
HP Server and Desktop
HP ILO - Remote Tech-Support Software
More .....



 
 

| Add Search | Advertise With JCSearch | Suggest a Site

Search the Web


Search Results

Protein Analysis
Directory > Science > Biology > Bioinformatics > Online Services > Protein Analysis

Web Sitesi

Jpred
Secondary protein structure prediction from amino acid sequence; based on a consensus from several
methods including DSC, PHD, NNSSP, PREDATOR, ZPRED, and MULPRED.

http://www.compbio.dundee.ac.uk/~www-jpred/
Reviews Rating: Not yet Rated Whois Check

Protein Structure Prediction Server (PSIPRED)
3D protein structure prediction from amino acid sequence. Includes MEMSAT for transmembrane
topology prediction, GenTHREADER and mGenTHREADER for fold recognition.

http://bioinf.cs.ucl.ac.uk/psipred/
Reviews Rating: Not yet Rated Whois Check

Betapred
Prediction of beta turns and their types using statistical algorithms. 5 different methods
including Chou-Fasman, Thornton's PRs, Gorbturn, and a consensus of all methods.

http://imtech.res.in/raghava/betatpred
Reviews Rating: Not yet Rated Whois Check

PDB Ligand Environment
Ligand search engine to EBI Macromolecule Structure Database. Provides PDB ID codes with further
visualization and statistics charts.

http://www.ebi.ac.uk/msd-srv/msdsite
Reviews Rating: Not yet Rated Whois Check

JAligner
Java Applet for an implementation of Smith-Waterman algorithm for pairwise biological sequence
alignment using dynamic programming (extended to support affine gap penalties) download or launch
from site.

http://foobox.com/~ahmed/jaligner
Reviews Rating: Not yet Rated Whois Check

3D-PSSM Fold Recognition
Combines sequence and structural information for predicting the structure and/or function of your
protein sequence, and can detect remote homologies beyond PSI-Blast.

http://www.sbg.bio.ic.ac.uk/~3dpssm/
Reviews Rating: Not yet Rated Whois Check

3D-JIGSAW
Automated comparative (homology) protein modelling, including an interactive mode which highlights
known domains and allows users to select and align templates.

http://www.bmm.icnet.uk/~3djigsaw/
Reviews Rating: Not yet Rated Whois Check

ProtFun
Ab initio predictions of protein function from protein sequence. The method works by integrating
various predicted post-translational and localizational aspects of the proteins submitted.

http://www.cbs.dtu.dk/services/ProtFun/
Reviews Rating: Not yet Rated Whois Check

EMBL Bioinformatic Harvester
Collection of human (swall) proteins, crossreferences to major prediction servers. Supported
predictions from: smart, string, blast, swall, mapview, sosui, ipsort and ncbi conserved domains.

http://harvester.embl.de
Reviews Rating: Not yet Rated Whois Check

Molecular Biology Tools Online
Includes WebOligoMelt (Annealing temperature of oligonucleotides), Virtual Ribosome (translate
nucleotide sequences into peptides), and SeqScanGraph (graph melting temperature along nucleotide
chain).

http://mbt.biobitfield.com/
Reviews Rating: Not yet Rated Whois Check

PredictProtein Server
Most widely used server for analysing protein sequences, searching protein databases, and
predicting protein structure - from Columbia Univ.

http://cubic.bioc.columbia.edu/predictprotein/
Reviews Rating: Not yet Rated Whois Check

Protonet
Provides automatic hierarchical classification of proteins sequences.
http://www.protonet.cs.huji.ac.il
Reviews Rating: Not yet Rated Whois Check

Entelechon Backtranslation tool
Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage
can be downloaded from a database and adjusted manually for each amino acid, if required. Java
applet.

http://www.entelechon.com/eng/backtranslation.html
Reviews Rating: Not yet Rated Whois Check

Munich Information Center for Protein Sequences (MIPS)
Bioinformatics research group offering organism specific information (Yeast, Cress) as well as
search tools for public databases.

http://mips.gsf.de/
Reviews Rating: Not yet Rated Whois Check

Combinatorial Extension of Polypeptides
Method for finding 3-D similarities in protein structures from the UCSD Supercomputer Center.
http://cl.sdsc.edu/ce.html
Reviews Rating: Not yet Rated Whois Check

Proteomics Tools
Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
http://www.expasy.ch/tools/
Reviews Rating: Not yet Rated Whois Check

InterPro - The Integrated Resource of Protein Domains and Functional Sites.
A database built from Pfam, PRINTS and PROSITE.
http://www.ebi.ac.uk/interpro/
Reviews Rating: Not yet Rated Whois Check

The Protein Information Resource
In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese
International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence
Database --- a comprehensive, annotated, and non-redundant set of protein sequence databases in
which entries are classified into family groups and alignments of each group are available.

http://pir.georgetown.edu
Reviews Rating: Not yet Rated Whois Check

Swiss-Model
Automated comparative protein modelling server to make protein modelling accessible to biochemists
and molecular biologists worldwide - from GlaxoWellcome Experimental Research, Geneva, Switzerland.

http://www.expasy.ch/swissmod/SWISS-MODEL.html
Reviews Rating: Not yet Rated Whois Check

Proteomics Analysis: Z3 and LabOnWeb's Z3OnWeb
Proteomic analysis for analyzing 2D-Gel images. Use Compugen's Z3 or Z3OnWeb utitlities for
automatic spot detection and registration (=alignment) of protein gel images to match the spots.

http://www.2dgels.com
Reviews Rating: Not yet Rated Whois Check

Swiss-Pdb Viewer
User-friendly interface allowing analysis of several proteins at once, including superimposition to
deduce structural alignments, and compare active sites. From GlaxoWellcome Experimental Research,
Geneva, Switzerland.

http://www.expasy.ch/spdbv/
Reviews Rating: Not yet Rated Whois Check

Quaternary Structure Prediction
An experimental bioinformatics server. Classifies protein sequences as homodimers or
non-homodimers. Applications: metabolic reconstruction, protein structure and function assignment,
and drug-design.

http://mericity.com/
Reviews Rating: Not yet Rated Whois Check

SWISS-PROT + TrEMBL
The SWISS-PROT database contains high-quality annotation, is non-redundant and cross-referenced to
many other databases. SWISS-PROT is accompanied by TrEMBL, a computer-annotated supplement, which
contains the translations of all coding sequences (CDS) present in the EMBL Nucleotide Sequence
Database, which are not yet integrated into SWISS-PROT.

http://www.ebi.ac.uk/swissprot/
Reviews Rating: Not yet Rated Whois Check

 


Jasminecorp.net directory is based on the Open Directory and is being modified by Jasminecorp.

©2004 Jasmine Computers Inc.

Click here to subscribe for Jasminecorp's product News.

Home | JCBid |Software Development | Domain Registration | Hosting | Web Designing | Buy Books | Advertise with JCSearch | Whois | IP Locator | Add Search | Shopping | Store | Free Blogs | Free GuestBook | Free E-Cards | Free Games | Free Tutorials | Set as Home | Add to Favorite | Suggest a Site | Directory | Our Portfolio | Terms of service | Free quote | Tell a Friend | Special Offer | Job Opportunities | games | Usenet Groups

Submit a Site to Jasminecorp.net Directory || Advertise with us

 

Help build the largest human-edited directory on the web.
Submit a Site - Open Directory Project - Become an Editor
Get a Domain Name:
.com .us .info
.org .in .name
.net .biz .asia