| Directory > Science > Biology > Genetics > Software > Quantitative Genetics Grain Crops Breeding
Access to MQTL (simplified composite QTL mapping), MSIM and GREGOR (genetic simulation) and KIN
(kinship coefficients). DOS, UNIX and PASCAL source code is free. From McGill University .
http://gnome.agrenv.mcgill.ca/
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ASReml Cookbook
Statistical software designed for fitting mixed models for large datasets. Contains commented code
for univariate and multivariate analysis including longitudinal and spatial analysis. Emphasis
towards tree breeding.
http://uncronopio.org/luis/asreml_cookbook.html
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Finnish Forest Genetics and Tree Breeding
Links to population and quantitative genetic software of interest in tree improvement, but also
useful in other species.
http://www.metla.fi/info/vlib/forestgen/software.htm
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Quantitative Genetics Resources
List of resources with links to programs and notes on a range of subjects including animal and
plant breeding, and evolutionary and human genetics.
http://nitro.biosci.arizona.edu/zbook/book.html
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Genup
Free software to assist learning quantitative genetic concepts (animal breeding) for WIN.
http://www-personal.une.edu.au/~bkinghor/genup.htm
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Laboratory of Plant Breeding, Wageningen
Offers free downloadable genetics and plant breeding related software.
http://www.dpw.wau.nl/pv/
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PIGBLUP and BREEDPLAN
Animal Genetics and Breeding Unit of University of New England, Australia have developed BLUP
software for genetic selection of swine and beef cattle. Little information is on this site, so
ABRI would have to be contacted.
http://abri.une.edu.au
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Ivory Tower Software
Genetics and breeding simulation software allows students to breed virtual organisms with 2000
genes. The site gives access to a free demo version of the WIN program.
http://www.i-tower.com/genetics.htm
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VCE
Groeneveld's Variance Component Estimation software was developed for animal breeding problems.
WIN and UNIX versions are free for research use. PEST documentation is also available here.
http://www.tzv.fal.de/~eg/
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Ignacy Misztal
Animal breeding oriented programs for sparse matrix multiple trait REML and BLUP. Fortran source
is free for research use.
http://nce.ads.uga.edu/~ignacy/programs.html
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DFREML
Meyer's variance component estimation software for animal breeding is free for research purposes,
available for UNIX, DOS and FORTRAN source code.
http://agbu.une.edu.au/~kmeyer/dfreml.html
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DESIRE
Explore possible selection outcomes when goals (desired gains) are set for traits. This free WIN
program is also contained in GENUP.
http://www-personal.une.edu.au/~bkinghor/desire.htm
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Pedigree Viewer
Unique display and examination tool for large pedigrees, with inbreeding and genetic merit data
also. Free WIN program.
http://www-personal.une.edu.au/~bkinghor/pedigree.htm
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Animal Breeding & Genetics, Wageningen
Follow the software link to find SIP (Selection Index Program), MAGGIC (Gibbs Sampling) and
GENEFLOW written for animal breeders. Free software for WIN.
http://www.zod.wau.nl/vf/links/frame_links.html
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The CompuPed 4.0 Pedigree Program
Extended & reverse pedigrees, inbreeding coefficients and genetic inheritance capabilities for
Win and Mac. Download a demo or order online.
http://www.compuped.com/
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GeneFlow Inc
This Virginia, USA company provides software (GeneFlow, SynerGene, QTLlocate) and services oriented
towards plant breeding. Website does not give prices or operating systems supported.
http://www.geneflowinc.com/
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