| Directory > Science > Chemistry > Software > Structural > Visualization Qmol
A lightweight molecular viewer for Windows 95/NT and X Windows. Freely available; includes source
code.
http://www.mbg.cornell.edu/shalloway/jason/qmol.html
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Molda
A molecular model building program for displaying data from MM2, MOPAC, Gaussian94, charmm and
amber4 outputs. Supported on most windows, mac and unix platforms.
http://www.molda.org/
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Molcular Model Kits
Plastic molecular structure models for research and education in science, intended especially for
biochemistry.
http://www.hgs-model.com/
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RasMol
Molecular visualization freeware for proteins, DNA, and macromolecules. Freely available for
Windows, Macintosh, and UNIX.
http://www.umass.edu/microbio/rasmol/
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Review of Molecular Modelling Programs
Reviews, screenshots, and table of features comparing over a dozen freely available molecular
modelling and viewing programs.
http://www.marcsaric.de/molmod1.html
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Biodesigner and iMol
A molecular viewer for Windows9x systems with sequence editor and protein builder. Free for
academic use. Additionaly the iMol molecule viewer is available for Mac OS X systems.
http://www.pirx.com/
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ProteinScope
ProteinScope is a free program to view and create animations of Protein Data Bank PDB files.
http://www.proteinscope.com
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Pymol
A free and flexible molecular graphics and modelling package which can be also used to generate
animated sequences.
http://www.pymol.org
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gOpenMol
A free program for the analysis of molecular dynamics trajectories and the display of molecular
orbitals, electron densities and electrostatic potentials. Supports many file formats like the
GaussianXX, Jaguar, CHARMM, and AMBER.
http://www.csc.fi/~laaksone/gopenmol/gopenmol.html
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Ymol
A free molecular visualization and animation program for the X window system. Creates images and
movies, using either the built in renderer or povray. Still alpha.
http://www.teoroo.mkem.uu.se/daniels/ymol.html
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Historical Molecular Graphics
Digitized versions of 16mm movies of molecular structures produced in the early days of interactive
molecular graphics.
http://www.umass.edu/molvis/francoeur/movgallery/moviegallery.html
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Labquip
Plastic molecular models for constructing polypeptides and DNA molecules.
http://www.labquip.clara.net/index.html
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Molymod Molecular Models
Plastic molecular models for use in chemistry, biochemistry, molecular biology (DNA double helix),
semiconductors and crystal lattice structures.
http://www.molecular-model.com/
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WebLab Viewer
A Windows9X/NT program to visualize and analyze small molecules and proteins. Also available as an
ActiveX Control.
http://www.accelrys.com/viewer/
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VMD
A free program for visualization and analysis of biological systems such as proteins, nucleic
acids, and lipid bilayer assemblies.
http://www.ks.uiuc.edu/Research/vmd/
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Swiss-PdbViewer
A free program for viewing and analyzing several proteins at the same time. Some energy minimzation
and homology modeling features are also included.
http://www.expasy.ch/spdbv/mainpage.html
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MOLMOL
A free program for displaying, analyzing, and manipulating the three-dimensional structure of
biological macromolecules, with emphasis on structures determined by NMR. Runs on UNIX and Windows
NT/95. The site offers an online tutorial.
http://www.mol.biol.ethz.ch/wuthrich/software/molmol/
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Protein Explorer
A web-based viewer for the 3D structures of proteins, DNA and RNA. Requires Netscape and the Chime
plugin, which is only available for Windows9x.
http://www.umass.edu/microbio/chime/explorer/
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OpenRasMol
Provided for the convenience of users and software developers of open source versions of RasMol.
http://www.openrasmol.org/
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Grasp
A visualization and analysis program useful for the display and manipulation of the surfaces of
molecules and their electrostatic properties. Commercial software.
http://honiglab.cpmc.columbia.edu/grasp/
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Dino
A free 3D visualization program for structural biology data with emphasis on analyzing surface or
electron density properties. Output can be written as PNG, PostScript or POV-Ray. Runs on IRIX,
Linux, OSF1 and SunOS.
http://www.bioz.unibas.ch/~xray/dino/
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DTMM
Desktop Molecular Modeller: A simple program for constructing and viewing small molecules and
proteins in 3D with some energy calculation/minimization capabilities. Run on any PC with Windows
9X/NT. Commercial software.
http://www.polyhedron.co.uk/dtmm/dtmm.html
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OpenScience
A directory of links to free molecule viewers and editors.
http://www.openscience.org/links.php?section=56
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