| Directory > Science > Biology > Genetics > Software High Performance Computing and Informatics Office
US National Institutes of Health site with extensive genetic linkage analysis application resources
on high performance computer systems. Formerly the Computational Methods and Algorithms Group.
http://hpcio.cit.nih.gov/
Reviews Rating: Not yet Rated
Whois Check
Statistical Genetics Software
Collection of primarily Fortan programs for genetic analysis. Requires registration to download.
http://www.biomath.medsch.ucla.edu/faculty/klange/software.html
Reviews Rating: Not yet Rated
Whois Check
The Darwin Manual
Guide and list of commands used to run this programming language. Library contains programs to
compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make
secondary structure predictions.
http://www.inf.ethz.ch/personal/gonnet/DarwinManual/DarwinManual.html
Reviews Rating: Not yet Rated
Whois Check
PowerSSR
Set of statistical methods for discrete genetic data analysis, designed especially for
microsatellite data analysis. Includes downloadable versions for Windows and Linux.
http://statgen.ncsu.edu/statgen/soft_powerssr.html
Reviews Rating: Not yet Rated
Whois Check
GeneticStudio
A complete suite of population genetic analysis programs for MAC. Includes plugin modules.
http://www.umsl.edu/~biology/Dyer/GeneticStudio/
Reviews Rating: Not yet Rated
Whois Check
Contentsoft AG
Offers microarray data mining software for Windows platform featuring double conjugated clustering
and SVD sorting methods. Includes a free trial version.
http://www.contentsoft.de/
Reviews Rating: Not yet Rated
Whois Check
MapPop
Software for selective mapping and bin mapping by Daniel Brown and Todd Vision. WIN version,
documentation and references are available here.
http://ars-genome.cornell.edu/software/MapPop/
Reviews Rating: Not yet Rated
Whois Check
Whitehead Institute Center for Genome Research
Follow the links for GeneHunter, MapMaker, Primer, and RHMapper documentation and free software, in
UNIX and C source code.
http://www-genome.wi.mit.edu/
Reviews Rating: Not yet Rated
Whois Check
Genetic Linkage Analysis
Offers links and other resources for genetic analysis software from The Rockefeller University.
http://linkage.rockefeller.edu/
Reviews Rating: Not yet Rated
Whois Check
STRand
Open-source program to automate or speed up the analysis of DNA fragment length polymorphism
samples run on fluorescence based gels . Instructions for use and program download available .
http://www.vgl.ucdavis.edu/STRand
Reviews Rating: Not yet Rated
Whois Check
Alice Software
Database system to build and publish synonymised checklists of species. Species descriptions
include pre-established fields and detailed descriptions employing any number of user-defined
fields.
http://www.alicesoftware.com/
Reviews Rating: Not yet Rated
Whois Check
Big Bench Software
Database application designed for transgenic mouse colonies. A complete colony management software
solution for Macintosh . Downloadable demo version .
http://www.bigbenchsoftware.com/
Reviews Rating: Not yet Rated
Whois Check
Istituto di Genetica Biochimica ed Evoluzionistica
Program that performs a permutation-based statistical test to detect genetic divergence among
populations from DNA fingerprinting data . Downloadable source Fortran code, executable files and
user manual .
http://www.igbe.pv.cnr.it/software.html
Reviews Rating: Not yet Rated
Whois Check
Applied Biosystems
Integrated software product designed to provide automation, high throughput, and high
allele-calling accuracy for linkage mapping and human identification applications. Windows NT .
http://www.appliedbiosystems.com/ga/GeneMapper/
Reviews Rating: Not yet Rated
Whois Check
Genetics Software
RASA 2.2 and other Mac software for phylogenetics, comparative genomics, and sequence analysis -
from Penn State University.
http://evolution.genetics.washington.edu/phylip/software.pars.html
Reviews Rating: Not yet Rated
Whois Check
Advanced Genetics Wizard
Online program that calculates the distribution of offspring genotypes from dominant, codominant
and recessive gene crosses, for up to 6 genes.
http://www.geneticswizard.com
Reviews Rating: Not yet Rated
Whois Check
Hands on Genetics
Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and
computer simulations. Download WIN and MAC demos and order online.
http://www.handsongenetics.com
Reviews Rating: Not yet Rated
Whois Check
Genetic Network Maps as Java Applets
Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme.
Molecular interactions modelled as Petri Net.
http://www.csa.ru/Inst/gorb_dep/inbios/genet/Urchin/u0maps.htm
Reviews Rating: Not yet Rated
Whois Check
DRIFT
Graphically represents the effect of genetic drift on gene frequency of one or more populations for
a single locus, two allele model in a closed population using stochastic simulation methods. The
DOS program is free.
http://nitro.biosci.arizona.edu/zbook/general/gened.html
Reviews Rating: Not yet Rated
Whois Check
Progeny Software
Supply pedigree drawing and genetic data management software for genetic research with a built-in
customizable relational database.
http://www.progeny2000.com
Reviews Rating: Not yet Rated
Whois Check
Linkage Analysis Software List
Extensive list of linkage, mapping and pedigree software with links for obtaining copies.
http://linkage.rockefeller.edu/soft/list.html
Reviews Rating: Not yet Rated
Whois Check
PopGen
Software that models population genetics with emphasis on genetic drift, selection, and migration.
http://cc.oulu.fi/~jaspi/popgen/popgen.htm
Reviews Rating: Not yet Rated
Whois Check
TagSorter
Database application designed to simplify the collation, sorting, comparison and identification of
SAGE tag sequences.
http://www.tagsorter.com
Reviews Rating: Not yet Rated
Whois Check
MuStaR Sequence Variant Database Software
Designed to create a database of mutation loci, to make this information available to as many
people as possible.
http://www.hgu.mrc.ac.uk/Softdata/Mustar/
Reviews Rating: Not yet Rated
Whois Check
The BioCatalog
Software directory of general interest in molecular biology and genetics.
http://www.ebi.ac.uk/biocat/
Reviews Rating: Not yet Rated
Whois Check
Locus Technology, Inc
Colony management, supports creation and tracking of research animals: transgenic and congenic
lines, knockouts and outbred strains.
http://www.locustechnology.com/
Reviews Rating: Not yet Rated
Whois Check
|
